.. _api-core:

pyretis.core
============

.. automodule:: pyretis.core

List of submodules
------------------

* :ref:`pyretis.core.box <api-core-box>`
* :ref:`pyretis.core.common <api-core-common>`
* :ref:`pyretis.core.engine_time <api-core-engine_time>`
* :ref:`pyretis.core.montecarlo <api-core-montecarlo>`
* :ref:`pyretis.core.particlefunctions <api-core-particlefunctions>`
* :ref:`pyretis.core.particles <api-core-particles>`
* :ref:`pyretis.core.path <api-core-path>`
* :ref:`pyretis.core.path_load <api-core-path-load>`
* :ref:`pyretis.core.pathensemble <api-core-pathensemble>`
* :ref:`pyretis.core.properties <api-core-properties>`
* :ref:`pyretis.core.random_gen <api-core-random_gen>`
* :ref:`pyretis.core.retis <api-core-retis>`
* :ref:`pyretis.core.system <api-core-system>`
* :ref:`pyretis.core.tis <api-core-tis>`
* :ref:`pyretis.core.units <api-core-units>`
* :ref:`pyretis.core.forcefieldhelp <api-core-forcefieldhelp>`
* :ref:`pyretis.core.provenance <api-core-provenance>`
* :ref:`pyretis.core.snapshot <api-core-snapshot>`
* :ref:`pyretis.core.systemhelp <api-core-systemhelp>`
* :ref:`pyretis.core.velocity <api-core-velocity>`


.. _api-core-box:

pyretis.core.box module
-----------------------

.. automodule:: pyretis.core.box
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-common:

pyretis.core.common module
--------------------------

.. automodule:: pyretis.core.common
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-engine_time:

pyretis.core.engine_time module
-------------------------------

.. automodule:: pyretis.core.engine_time
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-montecarlo:

pyretis.core.montecarlo module
------------------------------

.. automodule:: pyretis.core.montecarlo
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-particlefunctions:

pyretis.core.particlefunctions module
-------------------------------------

.. automodule:: pyretis.core.particlefunctions
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-particles:

pyretis.core.particles module
-----------------------------

.. automodule:: pyretis.core.particles
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-path:

pyretis.core.path module
------------------------

.. automodule:: pyretis.core.path
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-path-load:

pyretis.core.path_load module
-----------------------------

.. automodule:: pyretis.core.path_load
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-pathensemble:

pyretis.core.pathensemble module
--------------------------------

.. automodule:: pyretis.core.pathensemble
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-properties:

pyretis.core.properties module
------------------------------

.. automodule:: pyretis.core.properties
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-random_gen:

pyretis.core.random_gen module
------------------------------

.. automodule:: pyretis.core.random_gen
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-retis:

pyretis.core.retis module
-------------------------

.. automodule:: pyretis.core.retis
    :members: make_retis_step, retis_moves,
              retis_swap, retis_swap_zero, null_move
    :undoc-members:
    :show-inheritance:

.. _api-core-system:

pyretis.core.system module
--------------------------

.. automodule:: pyretis.core.system
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-tis:

pyretis.core.tis module
-----------------------

.. automodule:: pyretis.core.tis
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-units:

pyretis.core.units module
-------------------------

.. automodule:: pyretis.core.units
    :members:
    :undoc-members:
    :show-inheritance:

.. autodata:: CONSTANTS
   :annotation: = Dictionary with natural constants

.. autodata:: CONVERT
   :annotation: = Dictionary with conversion factors

.. autodata:: DIMENSIONS
   :annotation: = Dictionary with known dimensions

.. autodata:: UNITS
   :annotation: = Dictionary with known base units

.. autodata:: UNIT_SYSTEMS
   :annotation: = Dictionary with definitions of systems of units

.. _api-core-forcefieldhelp:

pyretis.core.forcefieldhelp module
----------------------------------

.. automodule:: pyretis.core.forcefieldhelp
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-provenance:

pyretis.core.provenance module
------------------------------

.. automodule:: pyretis.core.provenance
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-snapshot:

pyretis.core.snapshot module
----------------------------

.. automodule:: pyretis.core.snapshot

.. _api-core-systemhelp:

pyretis.core.systemhelp module
------------------------------

.. automodule:: pyretis.core.systemhelp
    :members:
    :undoc-members:
    :show-inheritance:

.. _api-core-velocity:

pyretis.core.velocity module
----------------------------

.. automodule:: pyretis.core.velocity
    :members:
    :undoc-members:
    :show-inheritance: