.. pyretis documentation master file, created by
   sphinx-quickstart on Fri Jun 19 11:01:24 2015.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

.. title:: Home

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PyRETIS
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.. raw:: html

   <section class="py-home-hero">
     <div class="py-home-copy">
       <p class="py-home-kicker">Develop branch / PyRETIS 4.dev</p>
       <h1>Rare-event molecular simulation with Python.</h1>
       <p>
         PyRETIS implements transition-interface and (infinite)
         replica-exchange path-sampling methods for computing rare-event
         kinetics in molecular systems. It is a Python library linked to
         external engines including OpenMM, GROMACS, LAMMPS and CP2K,
         allowing atomistic, QM and MD simulations. The suite is
         user-friendly: it requires only simple input files for the
         simulations and provides an intuitive graphical user interface
         for result analysis and visualization.
       </p>
       <div class="py-home-actions">
         <a class="py-button primary" href="user/install.html">Install develop</a>
         <a class="py-button" href="user/quickstart.html">Quickstart</a>
         <a class="py-button" href="user/tutorials.html">Tutorials</a>
         <a class="py-button" href="user/our-results.html">Scientific results</a>
         <a class="py-button" href="user/pyvisa.html">PyVisA</a>
       </div>
       <div class="py-partner-logos" aria-label="Partner institutions">
         <span>Partner institutions</span>
         <img src="_static/img/partners/uis.svg" alt="University of Stavanger">
         <img src="_static/img/partners/ntnu.svg" alt="NTNU">
       </div>
     </div>
     <div class="py-home-visual" aria-label="PyRETIS application examples">
       <img class="py-home-logo" src="_static/img/logo4.png" alt="PyRETIS">
       <div class="py-path-visual" aria-hidden="true">
         <svg viewBox="0 0 560 250" role="presentation">
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         <div class="py-state py-state-a">A</div>
         <div class="py-state py-state-b">B</div>
       </div>
     </div>
   </section>

.. toctree::
    :maxdepth: 2
    :hidden:

    about/index.rst
    user/index.rst
    api/pyretis.rst
    examples/index.rst
    developer/index.rst